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...@@ -7,11 +7,11 @@ See the [installation instructions here](https://ericlarg4.github.io/OligoR/) ...@@ -7,11 +7,11 @@ See the [installation instructions here](https://ericlarg4.github.io/OligoR/)
# Use # Use
OligoR is divided into six interconnected modules dedicated to specific tasks: OligoR is divided into six interconnected modules dedicated to specific tasks:
* [OligoRef](https://github.com/EricLarG4/OligoR/wiki/OligoRef) computes the theoretical masses and isotopic distributions of an analyte * [OligoRef](https://github.com/EricLarG4/OligoR/wiki/1.-OligoRef) computes the theoretical masses and isotopic distributions of an analyte
* [MSxploR](https://github.com/EricLarG4/OligoR/wiki/MSxploR) is used to import raw MS data, sum scans, select species of interest, and send data to other modules for further processing. * [MSxploR](https://github.com/EricLarG4/OligoR/wiki/2.-MSxploR) is used to import raw MS data, sum scans, select species of interest, and send data to other modules for further processing.
* [MSstackR](https://github.com/EricLarG4/OligoR/wiki/MSstackR) displays spectra from the species selected in MSxploR for discrete time points and performs isotopic peak picking and mono/bi-modal isotopic distribution modeling. * [MSstackR](https://github.com/EricLarG4/OligoR/wiki/3.-MSstackR) displays spectra from the species selected in MSxploR for discrete time points and performs isotopic peak picking and mono/bi-modal isotopic distribution modeling.
* [TimeR](https://github.com/EricLarG4/OligoR/wiki/TimeR) filters and plots time-dependent data, calculates raw and standard-corrected intensities and mass centroid for each scan. * [TimeR](https://github.com/EricLarG4/OligoR/wiki/4.-TimeR) filters and plots time-dependent data, calculates raw and standard-corrected intensities and mass centroid for each scan.
* [HDXplotR](https://github.com/EricLarG4/OligoR/wiki/5.-HDXplotR) plots HDX data from MSstackR and TimeR, and performs non-linear fitting of exchange kinetics. * [HDXplotR](https://github.com/EricLarG4/OligoR/wiki/5.-HDXplotR) plots HDX data from MSstackR and TimeR, and performs non-linear fitting of exchange kinetics.
* [TitratR](https://github.com/EricLarG4/OligoR/wiki/TitratR) determines amounts of bound and unbound species in equilibrium titrations, and calculates response factors and dissociation constants by internal standardization. * [TitratR](https://github.com/EricLarG4/OligoR/wiki/6.-TitratR) determines amounts of bound and unbound species in equilibrium titrations, and calculates response factors and dissociation constants by internal standardization.
To know more about each of these modules, click on the links above or in the right sidebar. To know more about each of these modules, click on the links above or in the right sidebar.