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...@@ -5,7 +5,7 @@ Welcome to the OligoR wiki! ...@@ -5,7 +5,7 @@ Welcome to the OligoR wiki!
OligoR is divided into six interconnected modules dedicated to specific tasks: OligoR is divided into six interconnected modules dedicated to specific tasks:
* [OligoRef](https://github.com/EricLarG4/OligoR/wiki/OligoRef) computes the theoretical masses and isotopic distributions of an analyte * [OligoRef](https://github.com/EricLarG4/OligoR/wiki/OligoRef) computes the theoretical masses and isotopic distributions of an analyte
* [MSxploR](https://github.com/EricLarG4/OligoR/wiki/MSxploR) is used to import raw MS data, sum scans, select species of interest, and send data to other modules for further processing. * [MSxploR](https://github.com/EricLarG4/OligoR/wiki/MSxploR) is used to import raw MS data, sum scans, select species of interest, and send data to other modules for further processing.
* [MSstackR](https://github.com/EricLarG4/OligoR/wiki/MSxploR) displays spectra from the species selected in MSxploR for discrete time points and performs isotopic peak picking and mono/bi-modal isotopic distribution modeling. * [MSstackR](https://github.com/EricLarG4/OligoR/wiki/MSstackR) displays spectra from the species selected in MSxploR for discrete time points and performs isotopic peak picking and mono/bi-modal isotopic distribution modeling.
* TimeR filters and plots time-dependent data, calculates raw and standard-corrected intensities and mass centroid for each scan. * TimeR filters and plots time-dependent data, calculates raw and standard-corrected intensities and mass centroid for each scan.
* HDXplotR plots HDX data from MSstackR and TimeR, and performs non-linear fitting of exchange kinetics. * HDXplotR plots HDX data from MSstackR and TimeR, and performs non-linear fitting of exchange kinetics.
* TitratR determines amounts of bound and unbound species in equilibrium titrations, and calculates response factors and dissociation constants by internal standardization. * TitratR determines amounts of bound and unbound species in equilibrium titrations, and calculates response factors and dissociation constants by internal standardization.
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